Migrate/Copy a database using automap_base and alembic











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I have a database x with some amount of data filled in every tables. I want to create a copy of that database (with same schema and exact data). First I create a Declaritive Base class of x using automap_base.



from sqlalchemy.ext.automap import automap_base
from sqlalchemy.orm import Session as s

def name_for_scalar_relationship(base, local_cls, referred_cls, constraint):
name = referred_cls.__name__.lower() + "_ref"
return name

Base = automap_base()

# engine, refering to the original database
engine = create_engine("mysql+pymysql://root:password1@localhost:3306/x")

# reflect the tables
Base.prepare(engine, reflect=True, name_for_scalar_relationship=name_for_scalar_relationship)

Router = Base.classes.router
########check the data in Router table
session = s(engine)
r1 = session.query(Router).all()
for n in r1:
print(n.name) #This returns all the router names


Getting some help from here I use alembic to upgrade the database y located at different place mysql+pymysql://anum:Anum-6630@localhost:3306/y.



from sqlalchemy.orm import sessionmaker as sm
from sqlalchemy import create_engine
from alembic import op

# revision identifiers, used by Alembic.
revision = 'fae98f65a6ff'
down_revision = None
branch_labels = None
depends_on = None


def upgrade():
bind = op.get_bind()
session = sm(bind=bind)
Base.metadata.create_all(bind=bind)

# session._add_bind(session, bind=bind)
session.add(Router(id=uuid.uuid().bytes, serial="Test1"))
session.commit()


The line Base.metadata.create_all(bind=bind) actually add all the tables (including proper FK constraints) into database y, but all the tables are empty, except one entry in Router table which I added manually. I tried using create_all() but that didn't worked aswel.
Is there a way to copy all the data from x to y database ?










share|improve this question




























    up vote
    0
    down vote

    favorite












    I have a database x with some amount of data filled in every tables. I want to create a copy of that database (with same schema and exact data). First I create a Declaritive Base class of x using automap_base.



    from sqlalchemy.ext.automap import automap_base
    from sqlalchemy.orm import Session as s

    def name_for_scalar_relationship(base, local_cls, referred_cls, constraint):
    name = referred_cls.__name__.lower() + "_ref"
    return name

    Base = automap_base()

    # engine, refering to the original database
    engine = create_engine("mysql+pymysql://root:password1@localhost:3306/x")

    # reflect the tables
    Base.prepare(engine, reflect=True, name_for_scalar_relationship=name_for_scalar_relationship)

    Router = Base.classes.router
    ########check the data in Router table
    session = s(engine)
    r1 = session.query(Router).all()
    for n in r1:
    print(n.name) #This returns all the router names


    Getting some help from here I use alembic to upgrade the database y located at different place mysql+pymysql://anum:Anum-6630@localhost:3306/y.



    from sqlalchemy.orm import sessionmaker as sm
    from sqlalchemy import create_engine
    from alembic import op

    # revision identifiers, used by Alembic.
    revision = 'fae98f65a6ff'
    down_revision = None
    branch_labels = None
    depends_on = None


    def upgrade():
    bind = op.get_bind()
    session = sm(bind=bind)
    Base.metadata.create_all(bind=bind)

    # session._add_bind(session, bind=bind)
    session.add(Router(id=uuid.uuid().bytes, serial="Test1"))
    session.commit()


    The line Base.metadata.create_all(bind=bind) actually add all the tables (including proper FK constraints) into database y, but all the tables are empty, except one entry in Router table which I added manually. I tried using create_all() but that didn't worked aswel.
    Is there a way to copy all the data from x to y database ?










    share|improve this question


























      up vote
      0
      down vote

      favorite









      up vote
      0
      down vote

      favorite











      I have a database x with some amount of data filled in every tables. I want to create a copy of that database (with same schema and exact data). First I create a Declaritive Base class of x using automap_base.



      from sqlalchemy.ext.automap import automap_base
      from sqlalchemy.orm import Session as s

      def name_for_scalar_relationship(base, local_cls, referred_cls, constraint):
      name = referred_cls.__name__.lower() + "_ref"
      return name

      Base = automap_base()

      # engine, refering to the original database
      engine = create_engine("mysql+pymysql://root:password1@localhost:3306/x")

      # reflect the tables
      Base.prepare(engine, reflect=True, name_for_scalar_relationship=name_for_scalar_relationship)

      Router = Base.classes.router
      ########check the data in Router table
      session = s(engine)
      r1 = session.query(Router).all()
      for n in r1:
      print(n.name) #This returns all the router names


      Getting some help from here I use alembic to upgrade the database y located at different place mysql+pymysql://anum:Anum-6630@localhost:3306/y.



      from sqlalchemy.orm import sessionmaker as sm
      from sqlalchemy import create_engine
      from alembic import op

      # revision identifiers, used by Alembic.
      revision = 'fae98f65a6ff'
      down_revision = None
      branch_labels = None
      depends_on = None


      def upgrade():
      bind = op.get_bind()
      session = sm(bind=bind)
      Base.metadata.create_all(bind=bind)

      # session._add_bind(session, bind=bind)
      session.add(Router(id=uuid.uuid().bytes, serial="Test1"))
      session.commit()


      The line Base.metadata.create_all(bind=bind) actually add all the tables (including proper FK constraints) into database y, but all the tables are empty, except one entry in Router table which I added manually. I tried using create_all() but that didn't worked aswel.
      Is there a way to copy all the data from x to y database ?










      share|improve this question















      I have a database x with some amount of data filled in every tables. I want to create a copy of that database (with same schema and exact data). First I create a Declaritive Base class of x using automap_base.



      from sqlalchemy.ext.automap import automap_base
      from sqlalchemy.orm import Session as s

      def name_for_scalar_relationship(base, local_cls, referred_cls, constraint):
      name = referred_cls.__name__.lower() + "_ref"
      return name

      Base = automap_base()

      # engine, refering to the original database
      engine = create_engine("mysql+pymysql://root:password1@localhost:3306/x")

      # reflect the tables
      Base.prepare(engine, reflect=True, name_for_scalar_relationship=name_for_scalar_relationship)

      Router = Base.classes.router
      ########check the data in Router table
      session = s(engine)
      r1 = session.query(Router).all()
      for n in r1:
      print(n.name) #This returns all the router names


      Getting some help from here I use alembic to upgrade the database y located at different place mysql+pymysql://anum:Anum-6630@localhost:3306/y.



      from sqlalchemy.orm import sessionmaker as sm
      from sqlalchemy import create_engine
      from alembic import op

      # revision identifiers, used by Alembic.
      revision = 'fae98f65a6ff'
      down_revision = None
      branch_labels = None
      depends_on = None


      def upgrade():
      bind = op.get_bind()
      session = sm(bind=bind)
      Base.metadata.create_all(bind=bind)

      # session._add_bind(session, bind=bind)
      session.add(Router(id=uuid.uuid().bytes, serial="Test1"))
      session.commit()


      The line Base.metadata.create_all(bind=bind) actually add all the tables (including proper FK constraints) into database y, but all the tables are empty, except one entry in Router table which I added manually. I tried using create_all() but that didn't worked aswel.
      Is there a way to copy all the data from x to y database ?







      python mysql sqlalchemy alembic






      share|improve this question















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      share|improve this question








      edited Nov 22 at 15:39









      davidism

      61.5k12156175




      61.5k12156175










      asked Nov 22 at 15:34









      Anum Sheraz

      492215




      492215
























          1 Answer
          1






          active

          oldest

          votes

















          up vote
          0
          down vote













          Since no one answered, here is my wild method that does the copying:
          Because the tables needs to be created in order (to avoid FK constraints errors), I have to define an ordered-list containing each table



          Slow and NOT reliable solution:



          allTables = ["tableA", 
          "tableB", # <table B points to FK constraint of tableA>
          "tableC", # <table C points to FK constraint of tableB>
          ...]

          def copyAllContent():
          global allTables
          s = Session(bind=origEngine) # session bind to original table
          se = Session(bind=op.get_bind()) # session bind to cloned table (currently empty)
          try:
          for table in allTables:
          # print(table)
          rows = s.query(Base.classes._data[table]).all()
          for row in rows:
          local_object = se.merge(row) #merging both sessions
          se.add(local_object)
          se.commit()
          except Exception as e:
          print(e)


          The above method worked for most of the tables, but not all. e.g. table router existed in original database, but still I get errors in s.query(Base.classes._data[table]).all() no key exists with name router. Haven't got enough time to dig down to the solution for that.



          FAST and Reliable solution:



          Later on I found from here another FAST and quiet reliable solution using mysqldump



          #copy sql dump from x database
          mysqldump --column-statistics=0 -P 8000 -h localhost -u root -p --hex-blob x > x_dump.sql


          The above command-line mysqldump command creates a sql dump file named x_dump.sql which contains all the necessary SQL scripts required to re-generate your database. Now All we need to do is apply this sql dump file to another database y



          #clone the database contents into y database
          mysql -P 3306 -h localhost -u anum -p y < x_dump.sql


          Here is pythonic version of doing the same



          import subprocess

          #copy sql dump from x database - blocking call (use Popen for non-blocking)
          print(subprocess.call(["mysqldump", "--column-statistics=0", '-P', '8000', '-h', 'localhost', '-u', '<user>', '-p<password>',
          '--hex-blob', 'x', '>', 'x_dump.sql'], shell=True))

          print("done taking dump.")

          #clone the database contents into y database - blocking call
          print(subprocess.call(["mysql", '-P', '3306', '-h', 'localhost', '-u', '<user>', '-p<password>',
          'y', '<', 'x_dump.sql'], shell=True))

          print("done cloning the sqlDump.")





          share|improve this answer





















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            1 Answer
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            active

            oldest

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            1 Answer
            1






            active

            oldest

            votes









            active

            oldest

            votes






            active

            oldest

            votes








            up vote
            0
            down vote













            Since no one answered, here is my wild method that does the copying:
            Because the tables needs to be created in order (to avoid FK constraints errors), I have to define an ordered-list containing each table



            Slow and NOT reliable solution:



            allTables = ["tableA", 
            "tableB", # <table B points to FK constraint of tableA>
            "tableC", # <table C points to FK constraint of tableB>
            ...]

            def copyAllContent():
            global allTables
            s = Session(bind=origEngine) # session bind to original table
            se = Session(bind=op.get_bind()) # session bind to cloned table (currently empty)
            try:
            for table in allTables:
            # print(table)
            rows = s.query(Base.classes._data[table]).all()
            for row in rows:
            local_object = se.merge(row) #merging both sessions
            se.add(local_object)
            se.commit()
            except Exception as e:
            print(e)


            The above method worked for most of the tables, but not all. e.g. table router existed in original database, but still I get errors in s.query(Base.classes._data[table]).all() no key exists with name router. Haven't got enough time to dig down to the solution for that.



            FAST and Reliable solution:



            Later on I found from here another FAST and quiet reliable solution using mysqldump



            #copy sql dump from x database
            mysqldump --column-statistics=0 -P 8000 -h localhost -u root -p --hex-blob x > x_dump.sql


            The above command-line mysqldump command creates a sql dump file named x_dump.sql which contains all the necessary SQL scripts required to re-generate your database. Now All we need to do is apply this sql dump file to another database y



            #clone the database contents into y database
            mysql -P 3306 -h localhost -u anum -p y < x_dump.sql


            Here is pythonic version of doing the same



            import subprocess

            #copy sql dump from x database - blocking call (use Popen for non-blocking)
            print(subprocess.call(["mysqldump", "--column-statistics=0", '-P', '8000', '-h', 'localhost', '-u', '<user>', '-p<password>',
            '--hex-blob', 'x', '>', 'x_dump.sql'], shell=True))

            print("done taking dump.")

            #clone the database contents into y database - blocking call
            print(subprocess.call(["mysql", '-P', '3306', '-h', 'localhost', '-u', '<user>', '-p<password>',
            'y', '<', 'x_dump.sql'], shell=True))

            print("done cloning the sqlDump.")





            share|improve this answer

























              up vote
              0
              down vote













              Since no one answered, here is my wild method that does the copying:
              Because the tables needs to be created in order (to avoid FK constraints errors), I have to define an ordered-list containing each table



              Slow and NOT reliable solution:



              allTables = ["tableA", 
              "tableB", # <table B points to FK constraint of tableA>
              "tableC", # <table C points to FK constraint of tableB>
              ...]

              def copyAllContent():
              global allTables
              s = Session(bind=origEngine) # session bind to original table
              se = Session(bind=op.get_bind()) # session bind to cloned table (currently empty)
              try:
              for table in allTables:
              # print(table)
              rows = s.query(Base.classes._data[table]).all()
              for row in rows:
              local_object = se.merge(row) #merging both sessions
              se.add(local_object)
              se.commit()
              except Exception as e:
              print(e)


              The above method worked for most of the tables, but not all. e.g. table router existed in original database, but still I get errors in s.query(Base.classes._data[table]).all() no key exists with name router. Haven't got enough time to dig down to the solution for that.



              FAST and Reliable solution:



              Later on I found from here another FAST and quiet reliable solution using mysqldump



              #copy sql dump from x database
              mysqldump --column-statistics=0 -P 8000 -h localhost -u root -p --hex-blob x > x_dump.sql


              The above command-line mysqldump command creates a sql dump file named x_dump.sql which contains all the necessary SQL scripts required to re-generate your database. Now All we need to do is apply this sql dump file to another database y



              #clone the database contents into y database
              mysql -P 3306 -h localhost -u anum -p y < x_dump.sql


              Here is pythonic version of doing the same



              import subprocess

              #copy sql dump from x database - blocking call (use Popen for non-blocking)
              print(subprocess.call(["mysqldump", "--column-statistics=0", '-P', '8000', '-h', 'localhost', '-u', '<user>', '-p<password>',
              '--hex-blob', 'x', '>', 'x_dump.sql'], shell=True))

              print("done taking dump.")

              #clone the database contents into y database - blocking call
              print(subprocess.call(["mysql", '-P', '3306', '-h', 'localhost', '-u', '<user>', '-p<password>',
              'y', '<', 'x_dump.sql'], shell=True))

              print("done cloning the sqlDump.")





              share|improve this answer























                up vote
                0
                down vote










                up vote
                0
                down vote









                Since no one answered, here is my wild method that does the copying:
                Because the tables needs to be created in order (to avoid FK constraints errors), I have to define an ordered-list containing each table



                Slow and NOT reliable solution:



                allTables = ["tableA", 
                "tableB", # <table B points to FK constraint of tableA>
                "tableC", # <table C points to FK constraint of tableB>
                ...]

                def copyAllContent():
                global allTables
                s = Session(bind=origEngine) # session bind to original table
                se = Session(bind=op.get_bind()) # session bind to cloned table (currently empty)
                try:
                for table in allTables:
                # print(table)
                rows = s.query(Base.classes._data[table]).all()
                for row in rows:
                local_object = se.merge(row) #merging both sessions
                se.add(local_object)
                se.commit()
                except Exception as e:
                print(e)


                The above method worked for most of the tables, but not all. e.g. table router existed in original database, but still I get errors in s.query(Base.classes._data[table]).all() no key exists with name router. Haven't got enough time to dig down to the solution for that.



                FAST and Reliable solution:



                Later on I found from here another FAST and quiet reliable solution using mysqldump



                #copy sql dump from x database
                mysqldump --column-statistics=0 -P 8000 -h localhost -u root -p --hex-blob x > x_dump.sql


                The above command-line mysqldump command creates a sql dump file named x_dump.sql which contains all the necessary SQL scripts required to re-generate your database. Now All we need to do is apply this sql dump file to another database y



                #clone the database contents into y database
                mysql -P 3306 -h localhost -u anum -p y < x_dump.sql


                Here is pythonic version of doing the same



                import subprocess

                #copy sql dump from x database - blocking call (use Popen for non-blocking)
                print(subprocess.call(["mysqldump", "--column-statistics=0", '-P', '8000', '-h', 'localhost', '-u', '<user>', '-p<password>',
                '--hex-blob', 'x', '>', 'x_dump.sql'], shell=True))

                print("done taking dump.")

                #clone the database contents into y database - blocking call
                print(subprocess.call(["mysql", '-P', '3306', '-h', 'localhost', '-u', '<user>', '-p<password>',
                'y', '<', 'x_dump.sql'], shell=True))

                print("done cloning the sqlDump.")





                share|improve this answer












                Since no one answered, here is my wild method that does the copying:
                Because the tables needs to be created in order (to avoid FK constraints errors), I have to define an ordered-list containing each table



                Slow and NOT reliable solution:



                allTables = ["tableA", 
                "tableB", # <table B points to FK constraint of tableA>
                "tableC", # <table C points to FK constraint of tableB>
                ...]

                def copyAllContent():
                global allTables
                s = Session(bind=origEngine) # session bind to original table
                se = Session(bind=op.get_bind()) # session bind to cloned table (currently empty)
                try:
                for table in allTables:
                # print(table)
                rows = s.query(Base.classes._data[table]).all()
                for row in rows:
                local_object = se.merge(row) #merging both sessions
                se.add(local_object)
                se.commit()
                except Exception as e:
                print(e)


                The above method worked for most of the tables, but not all. e.g. table router existed in original database, but still I get errors in s.query(Base.classes._data[table]).all() no key exists with name router. Haven't got enough time to dig down to the solution for that.



                FAST and Reliable solution:



                Later on I found from here another FAST and quiet reliable solution using mysqldump



                #copy sql dump from x database
                mysqldump --column-statistics=0 -P 8000 -h localhost -u root -p --hex-blob x > x_dump.sql


                The above command-line mysqldump command creates a sql dump file named x_dump.sql which contains all the necessary SQL scripts required to re-generate your database. Now All we need to do is apply this sql dump file to another database y



                #clone the database contents into y database
                mysql -P 3306 -h localhost -u anum -p y < x_dump.sql


                Here is pythonic version of doing the same



                import subprocess

                #copy sql dump from x database - blocking call (use Popen for non-blocking)
                print(subprocess.call(["mysqldump", "--column-statistics=0", '-P', '8000', '-h', 'localhost', '-u', '<user>', '-p<password>',
                '--hex-blob', 'x', '>', 'x_dump.sql'], shell=True))

                print("done taking dump.")

                #clone the database contents into y database - blocking call
                print(subprocess.call(["mysql", '-P', '3306', '-h', 'localhost', '-u', '<user>', '-p<password>',
                'y', '<', 'x_dump.sql'], shell=True))

                print("done cloning the sqlDump.")






                share|improve this answer












                share|improve this answer



                share|improve this answer










                answered Nov 23 at 14:32









                Anum Sheraz

                492215




                492215






























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