Using predict.nls to see how well my model fits my data
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So I originally create a plot of my data using different points to show different combinations of factors.
plot(m, y, xlab='Body mass (kg)', ylab='Maximum oxygen uptake (litres/min)',
ylim=c(0.24,6.6), type='n')
points(m[s==0 & v==0], y[s==0 & v==0], pch=16, cex=0.6)
points(m[s==0 & v>0], y[s==0 & v>0], pch=1, cex=0.6)
points(m[s==1 & v==0], y[s==1 & v==0], pch=17, cex=0.6)
points(m[s==1 & v>0], y[s==1 & v>0], pch=2, cex=0.6)
I have then fitted a non-linear model to my data using nls.
fitness0.st <- list(a0=2/3, a1=0, a2=0, a3=0, b0=coefs[1], b1=coefs[2],
b2=coefs[3], b3=coefs[4], g0=coefs[5], g1=coefs[6], g2=coefs[7],
g3=coefs[8])
fitness0.nls <- nls(y ~ m^(a0+a1*s+a2*v+a3*sv)*(b0+b1*s+b2*v+b3*sv+
(g0+g1*s+g2*v+g3*sv)*a), start = fitness0.st)
And now I want to consider how well my model fits the data. I have produced the residual plots for my model using
plot(m,residuals(fitness0.nls), xlab='Body mass (kg)', ylab='Residuals',
xlim=c(30,130))
plot(fitted(fitness0.nls), residuals(fitness0.nls), xlab='Fitted values',
ylab='Residuals', pch=20)
qqnorm(residuals(fitness0.nls), pch=20, main='Normal QQ-plot')
qqline(residuals(fitness0.nls))
But I would also like to create a pot to show the fit of my model using predict but I am unsure how to do this. Can anyone help?
r statistics predict nls
add a comment |
up vote
0
down vote
favorite
So I originally create a plot of my data using different points to show different combinations of factors.
plot(m, y, xlab='Body mass (kg)', ylab='Maximum oxygen uptake (litres/min)',
ylim=c(0.24,6.6), type='n')
points(m[s==0 & v==0], y[s==0 & v==0], pch=16, cex=0.6)
points(m[s==0 & v>0], y[s==0 & v>0], pch=1, cex=0.6)
points(m[s==1 & v==0], y[s==1 & v==0], pch=17, cex=0.6)
points(m[s==1 & v>0], y[s==1 & v>0], pch=2, cex=0.6)
I have then fitted a non-linear model to my data using nls.
fitness0.st <- list(a0=2/3, a1=0, a2=0, a3=0, b0=coefs[1], b1=coefs[2],
b2=coefs[3], b3=coefs[4], g0=coefs[5], g1=coefs[6], g2=coefs[7],
g3=coefs[8])
fitness0.nls <- nls(y ~ m^(a0+a1*s+a2*v+a3*sv)*(b0+b1*s+b2*v+b3*sv+
(g0+g1*s+g2*v+g3*sv)*a), start = fitness0.st)
And now I want to consider how well my model fits the data. I have produced the residual plots for my model using
plot(m,residuals(fitness0.nls), xlab='Body mass (kg)', ylab='Residuals',
xlim=c(30,130))
plot(fitted(fitness0.nls), residuals(fitness0.nls), xlab='Fitted values',
ylab='Residuals', pch=20)
qqnorm(residuals(fitness0.nls), pch=20, main='Normal QQ-plot')
qqline(residuals(fitness0.nls))
But I would also like to create a pot to show the fit of my model using predict but I am unsure how to do this. Can anyone help?
r statistics predict nls
add a comment |
up vote
0
down vote
favorite
up vote
0
down vote
favorite
So I originally create a plot of my data using different points to show different combinations of factors.
plot(m, y, xlab='Body mass (kg)', ylab='Maximum oxygen uptake (litres/min)',
ylim=c(0.24,6.6), type='n')
points(m[s==0 & v==0], y[s==0 & v==0], pch=16, cex=0.6)
points(m[s==0 & v>0], y[s==0 & v>0], pch=1, cex=0.6)
points(m[s==1 & v==0], y[s==1 & v==0], pch=17, cex=0.6)
points(m[s==1 & v>0], y[s==1 & v>0], pch=2, cex=0.6)
I have then fitted a non-linear model to my data using nls.
fitness0.st <- list(a0=2/3, a1=0, a2=0, a3=0, b0=coefs[1], b1=coefs[2],
b2=coefs[3], b3=coefs[4], g0=coefs[5], g1=coefs[6], g2=coefs[7],
g3=coefs[8])
fitness0.nls <- nls(y ~ m^(a0+a1*s+a2*v+a3*sv)*(b0+b1*s+b2*v+b3*sv+
(g0+g1*s+g2*v+g3*sv)*a), start = fitness0.st)
And now I want to consider how well my model fits the data. I have produced the residual plots for my model using
plot(m,residuals(fitness0.nls), xlab='Body mass (kg)', ylab='Residuals',
xlim=c(30,130))
plot(fitted(fitness0.nls), residuals(fitness0.nls), xlab='Fitted values',
ylab='Residuals', pch=20)
qqnorm(residuals(fitness0.nls), pch=20, main='Normal QQ-plot')
qqline(residuals(fitness0.nls))
But I would also like to create a pot to show the fit of my model using predict but I am unsure how to do this. Can anyone help?
r statistics predict nls
So I originally create a plot of my data using different points to show different combinations of factors.
plot(m, y, xlab='Body mass (kg)', ylab='Maximum oxygen uptake (litres/min)',
ylim=c(0.24,6.6), type='n')
points(m[s==0 & v==0], y[s==0 & v==0], pch=16, cex=0.6)
points(m[s==0 & v>0], y[s==0 & v>0], pch=1, cex=0.6)
points(m[s==1 & v==0], y[s==1 & v==0], pch=17, cex=0.6)
points(m[s==1 & v>0], y[s==1 & v>0], pch=2, cex=0.6)
I have then fitted a non-linear model to my data using nls.
fitness0.st <- list(a0=2/3, a1=0, a2=0, a3=0, b0=coefs[1], b1=coefs[2],
b2=coefs[3], b3=coefs[4], g0=coefs[5], g1=coefs[6], g2=coefs[7],
g3=coefs[8])
fitness0.nls <- nls(y ~ m^(a0+a1*s+a2*v+a3*sv)*(b0+b1*s+b2*v+b3*sv+
(g0+g1*s+g2*v+g3*sv)*a), start = fitness0.st)
And now I want to consider how well my model fits the data. I have produced the residual plots for my model using
plot(m,residuals(fitness0.nls), xlab='Body mass (kg)', ylab='Residuals',
xlim=c(30,130))
plot(fitted(fitness0.nls), residuals(fitness0.nls), xlab='Fitted values',
ylab='Residuals', pch=20)
qqnorm(residuals(fitness0.nls), pch=20, main='Normal QQ-plot')
qqline(residuals(fitness0.nls))
But I would also like to create a pot to show the fit of my model using predict but I am unsure how to do this. Can anyone help?
r statistics predict nls
r statistics predict nls
asked Nov 22 at 1:15
Christie
11
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