Jupyter Notebook's terminal command not using correct conda environment
I have 2 conda environments installed:
- env1: base environment where jupyter-notebook is installed and started from
- env2: project environment with ipykernel installed
I manually added kernelspecs for the 2 environments following this guide.
Everything works fine. sys.executable in 2 kernels show separate, correct paths. But for terminal commands (i.e. !which python), no matter which kernel I'm running in the environment defaults to env1.
Is there any way to have the notebook automatically change this to the kernel's environment?
P.S. I already tried installing nb_conda, nb_conda_kernels
python jupyter-notebook conda
asked Nov 23 '18 at 5:12
Nguyễn Trọng Tín
7810
add a comment |
I have 2 conda environments installed:
- env1: base environment where jupyter-notebook is installed and started from
- env2: project environment with ipykernel installed
I manually added kernelspecs for the 2 environments following this guide.
Everything works fine. sys.executable in 2 kernels show separate, correct paths. But for terminal commands (i.e. !which python), no matter which kernel I'm running in the environment defaults to env1.
Is there any way to have the notebook automatically change this to the kernel's environment?
P.S. I already tried installing nb_conda, nb_conda_kernels
python jupyter-notebook conda
asked Nov 23 '18 at 5:12
Nguyễn Trọng Tín
7810
add a comment |
I have 2 conda environments installed:
- env1: base environment where jupyter-notebook is installed and started from
- env2: project environment with ipykernel installed
I manually added kernelspecs for the 2 environments following this guide.
Everything works fine. sys.executable in 2 kernels show separate, correct paths. But for terminal commands (i.e. !which python), no matter which kernel I'm running in the environment defaults to env1.
Is there any way to have the notebook automatically change this to the kernel's environment?
P.S. I already tried installing nb_conda, nb_conda_kernels
python jupyter-notebook conda
asked Nov 23 '18 at 5:12
Nguyễn Trọng Tín
7810
I have 2 conda environments installed:
- env1: base environment where jupyter-notebook is installed and started from
- env2: project environment with ipykernel installed
I manually added kernelspecs for the 2 environments following this guide.
Everything works fine. sys.executable in 2 kernels show separate, correct paths. But for terminal commands (i.e. !which python), no matter which kernel I'm running in the environment defaults to env1.
Is there any way to have the notebook automatically change this to the kernel's environment?
P.S. I already tried installing nb_conda, nb_conda_kernels
python jupyter-notebook conda
python jupyter-notebook conda
asked Nov 23 '18 at 5:12
Nguyễn Trọng Tín
7810
asked Nov 23 '18 at 5:12
Nguyễn Trọng Tín
7810
edited Dec 7 '18 at 3:52
asked Nov 23 '18 at 5:12
Nguyễn Trọng Tín
7810
asked Nov 23 '18 at 5:12
Nguyễn Trọng Tín
7810
asked Nov 23 '18 at 5:12
Nguyễn Trọng Tín
7810
7810
add a comment |
add a comment |
1 Answer
1
active
oldest
votes
install nb_conda and nb_conda_kernels into your base.
conda install nb_conda nb_conda_kernels -n env1
This should give you the ability to change kernel in jupyter, and use the env2 kernel.
answered Nov 26 '18 at 13:52
emmet02
67417
This does not work. In fact I already had these 2 packages from before.
– Nguyễn Trọng Tín
Dec 7 '18 at 3:51
Can you try listing kernelspecs? jupyter kernelspec list
– emmet02
Dec 7 '18 at 9:41
python3 /home/ec2-user/miniconda3/envs/airflow3/lib/python3.6/site-p ackages/ipykernel/resources | airflow3 /home/ec2-user/.local/share/jupyter/kernels/airflow3 | data_interface /home/ec2-user/.local/share/jupyter/kernels/data_interface
– Nguyễn Trọng Tín
Dec 7 '18 at 9:52
add a comment |
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1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
install nb_conda and nb_conda_kernels into your base.
conda install nb_conda nb_conda_kernels -n env1
This should give you the ability to change kernel in jupyter, and use the env2 kernel.
answered Nov 26 '18 at 13:52
emmet02
67417
This does not work. In fact I already had these 2 packages from before.
– Nguyễn Trọng Tín
Dec 7 '18 at 3:51
Can you try listing kernelspecs? jupyter kernelspec list
– emmet02
Dec 7 '18 at 9:41
python3 /home/ec2-user/miniconda3/envs/airflow3/lib/python3.6/site-p ackages/ipykernel/resources | airflow3 /home/ec2-user/.local/share/jupyter/kernels/airflow3 | data_interface /home/ec2-user/.local/share/jupyter/kernels/data_interface
– Nguyễn Trọng Tín
Dec 7 '18 at 9:52
add a comment |
install nb_conda and nb_conda_kernels into your base.
conda install nb_conda nb_conda_kernels -n env1
This should give you the ability to change kernel in jupyter, and use the env2 kernel.
answered Nov 26 '18 at 13:52
emmet02
67417
This does not work. In fact I already had these 2 packages from before.
– Nguyễn Trọng Tín
Dec 7 '18 at 3:51
Can you try listing kernelspecs? jupyter kernelspec list
– emmet02
Dec 7 '18 at 9:41
python3 /home/ec2-user/miniconda3/envs/airflow3/lib/python3.6/site-p ackages/ipykernel/resources | airflow3 /home/ec2-user/.local/share/jupyter/kernels/airflow3 | data_interface /home/ec2-user/.local/share/jupyter/kernels/data_interface
– Nguyễn Trọng Tín
Dec 7 '18 at 9:52
add a comment |
install nb_conda and nb_conda_kernels into your base.
conda install nb_conda nb_conda_kernels -n env1
This should give you the ability to change kernel in jupyter, and use the env2 kernel.
answered Nov 26 '18 at 13:52
emmet02
67417
install nb_conda and nb_conda_kernels into your base.
conda install nb_conda nb_conda_kernels -n env1
This should give you the ability to change kernel in jupyter, and use the env2 kernel.
answered Nov 26 '18 at 13:52
emmet02
67417
answered Nov 26 '18 at 13:52
emmet02
67417
answered Nov 26 '18 at 13:52
emmet02
67417
answered Nov 26 '18 at 13:52
emmet02
67417
67417
This does not work. In fact I already had these 2 packages from before.
– Nguyễn Trọng Tín
Dec 7 '18 at 3:51
Can you try listing kernelspecs? jupyter kernelspec list
– emmet02
Dec 7 '18 at 9:41
python3 /home/ec2-user/miniconda3/envs/airflow3/lib/python3.6/site-p ackages/ipykernel/resources | airflow3 /home/ec2-user/.local/share/jupyter/kernels/airflow3 | data_interface /home/ec2-user/.local/share/jupyter/kernels/data_interface
– Nguyễn Trọng Tín
Dec 7 '18 at 9:52
add a comment |
This does not work. In fact I already had these 2 packages from before.
– Nguyễn Trọng Tín
Dec 7 '18 at 3:51
Can you try listing kernelspecs? jupyter kernelspec list
– emmet02
Dec 7 '18 at 9:41
python3 /home/ec2-user/miniconda3/envs/airflow3/lib/python3.6/site-p ackages/ipykernel/resources | airflow3 /home/ec2-user/.local/share/jupyter/kernels/airflow3 | data_interface /home/ec2-user/.local/share/jupyter/kernels/data_interface
– Nguyễn Trọng Tín
Dec 7 '18 at 9:52
This does not work. In fact I already had these 2 packages from before.
– Nguyễn Trọng Tín
Dec 7 '18 at 3:51
This does not work. In fact I already had these 2 packages from before.
– Nguyễn Trọng Tín
Dec 7 '18 at 3:51
Can you try listing kernelspecs? jupyter kernelspec list
– emmet02
Dec 7 '18 at 9:41
Can you try listing kernelspecs? jupyter kernelspec list
– emmet02
Dec 7 '18 at 9:41
python3 /home/ec2-user/miniconda3/envs/airflow3/lib/python3.6/site-p ackages/ipykernel/resources | airflow3 /home/ec2-user/.local/share/jupyter/kernels/airflow3 | data_interface /home/ec2-user/.local/share/jupyter/kernels/data_interface
– Nguyễn Trọng Tín
Dec 7 '18 at 9:52
python3 /home/ec2-user/miniconda3/envs/airflow3/lib/python3.6/site-p ackages/ipykernel/resources | airflow3 /home/ec2-user/.local/share/jupyter/kernels/airflow3 | data_interface /home/ec2-user/.local/share/jupyter/kernels/data_interface
– Nguyễn Trọng Tín
Dec 7 '18 at 9:52
add a comment |
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